noone@mail.com Analysis of Dieting study 16S data % Fri Sep 7 05:46:18 2018

(1.3.1.4.5) Plots of Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'.

Plots are shown with relation to various combinations of meta data variables and in different graphical representations. Lots of plots here.

(1.3.1.4.5.2) Iterating over all combinations of grouping variables
(1.3.1.4.5.2.1) Entire pool of samples
(1.3.1.4.5.2.2) Iterating over Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.4.5.2.2.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.4.5.2.2.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.4.5.2.2.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.5.2.2.2.1.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.5.2.2.2.1.1.0) Table 138. Data table used for plots. Data for all pooled samples. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.5.2.2.2.1.1.0-3233957d83.1.3.1.4.5.2.2.2.1.1.csv

.record.id feature l2fc
MG1.patient Bacteroides.Otu0001 0.694991
MG10.patient Bacteroides.Otu0001 5.049920
MG13.patient Bacteroides.Otu0001 42.625385
MG14.patient Bacteroides.Otu0001 -0.242777
MG16.patient Bacteroides.Otu0001 0.173279
MG17.patient Bacteroides.Otu0001 1.894468
MG19.patient Bacteroides.Otu0001 0.802713
MG2.patient Bacteroides.Otu0001 -36.927183
MG21.patient Bacteroides.Otu0001 0.990007
MG22.patient Bacteroides.Otu0001 -1.763697
MG23.patient Bacteroides.Otu0001 0.287426
MG25.patient Bacteroides.Otu0001 2.785405
MG3.patient Bacteroides.Otu0001 3.089662
MG4.patient Bacteroides.Otu0001 1.622551
MG6.patient Bacteroides.Otu0001 -1.517464
MG8.patient Bacteroides.Otu0001 -0.424184
MG1.patient Bacteroides.Otu2520 7.047037
MG10.patient Bacteroides.Otu2520 -3.119746
MG13.patient Bacteroides.Otu2520 38.498057
MG14.patient Bacteroides.Otu2520 -0.803845
MG16.patient Bacteroides.Otu2520 -2.798154
MG17.patient Bacteroides.Otu2520 -4.773882
MG19.patient Bacteroides.Otu2520 -43.293915
MG2.patient Bacteroides.Otu2520 -3.452479
MG21.patient Bacteroides.Otu2520 -2.743763
MG22.patient Bacteroides.Otu2520 1.089384
MG23.patient Bacteroides.Otu2520 0.000000
MG25.patient Bacteroides.Otu2520 5.145809
MG3.patient Bacteroides.Otu2520 3.786875
MG4.patient Bacteroides.Otu2520 -0.745758
MG6.patient Bacteroides.Otu2520 -0.854567
MG8.patient Bacteroides.Otu2520 0.881099
MG1.patient Prevotella.Otu1987 -42.475127
MG10.patient Prevotella.Otu1987 0.000000
MG13.patient Prevotella.Otu1987 -1.613076
MG14.patient Prevotella.Otu1987 0.000000
MG16.patient Prevotella.Otu1987 0.000000
MG17.patient Prevotella.Otu1987 -8.254042
MG19.patient Prevotella.Otu1987 0.000000
MG2.patient Prevotella.Otu1987 -5.672154
MG21.patient Prevotella.Otu1987 42.028746
MG22.patient Prevotella.Otu1987 0.000000
MG23.patient Prevotella.Otu1987 0.000000
MG25.patient Prevotella.Otu1987 -2.791150
MG3.patient Prevotella.Otu1987 0.000000
MG4.patient Prevotella.Otu1987 0.000000
MG6.patient Prevotella.Otu1987 0.000000
MG8.patient Prevotella.Otu1987 -31.619530
MG1.patient Bacteroides.Otu2654 9.154794
MG10.patient Bacteroides.Otu2654 4.010515
MG13.patient Bacteroides.Otu2654 40.490152
MG14.patient Bacteroides.Otu2654 1.821609
MG16.patient Bacteroides.Otu2654 -1.354770
MG17.patient Bacteroides.Otu2654 -31.836630
MG19.patient Bacteroides.Otu2654 -36.078856
MG2.patient Bacteroides.Otu2654 -35.119830
MG21.patient Bacteroides.Otu2654 -0.521864
MG22.patient Bacteroides.Otu2654 -0.706593
MG23.patient Bacteroides.Otu2654 34.959004
MG25.patient Bacteroides.Otu2654 5.261781
MG3.patient Bacteroides.Otu2654 5.640960
MG4.patient Bacteroides.Otu2654 1.969530
MG6.patient Bacteroides.Otu2654 -33.160157
MG8.patient Bacteroides.Otu2654 2.340754
MG1.patient Bacteroides.Otu0863 2.493363
MG10.patient Bacteroides.Otu0863 2.879130
MG13.patient Bacteroides.Otu0863 40.174694
MG14.patient Bacteroides.Otu0863 2.522220
MG16.patient Bacteroides.Otu0863 3.051349
MG17.patient Bacteroides.Otu0863 -38.436527
MG19.patient Bacteroides.Otu0863 -38.623156
MG2.patient Bacteroides.Otu0863 2.823608
MG21.patient Bacteroides.Otu0863 -2.105128
MG22.patient Bacteroides.Otu0863 1.040321
MG23.patient Bacteroides.Otu0863 39.385208
MG25.patient Bacteroides.Otu0863 3.213274
MG3.patient Bacteroides.Otu0863 -2.529878
MG4.patient Bacteroides.Otu0863 -3.181104
MG6.patient Bacteroides.Otu0863 1.572731
MG8.patient Bacteroides.Otu0863 -1.523829
MG1.patient Bacteroides.Otu2038 1.663290
MG10.patient Bacteroides.Otu2038 36.073634
MG13.patient Bacteroides.Otu2038 7.467646
MG14.patient Bacteroides.Otu2038 2.306928
MG16.patient Bacteroides.Otu2038 -2.050774
MG17.patient Bacteroides.Otu2038 4.940348
MG19.patient Bacteroides.Otu2038 1.159382
MG2.patient Bacteroides.Otu2038 33.989275
MG21.patient Bacteroides.Otu2038 2.660962
MG22.patient Bacteroides.Otu2038 -3.672197
MG23.patient Bacteroides.Otu2038 1.055541
MG25.patient Bacteroides.Otu2038 2.869377
MG3.patient Bacteroides.Otu2038 2.857576
MG4.patient Bacteroides.Otu2038 1.647018
MG6.patient Bacteroides.Otu2038 -2.255223
MG8.patient Bacteroides.Otu2038 -1.749982
MG1.patient Faecalibacterium.Otu0067 -6.063997
MG10.patient Faecalibacterium.Otu0067 0.381534
MG13.patient Faecalibacterium.Otu0067 -0.663448
MG14.patient Faecalibacterium.Otu0067 -1.733991
MG16.patient Faecalibacterium.Otu0067 -1.509331
MG17.patient Faecalibacterium.Otu0067 1.246309
MG19.patient Faecalibacterium.Otu0067 3.007372
MG2.patient Faecalibacterium.Otu0067 -0.819669
MG21.patient Faecalibacterium.Otu0067 1.900814
MG22.patient Faecalibacterium.Otu0067 -0.426908
MG23.patient Faecalibacterium.Otu0067 1.080606
MG25.patient Faecalibacterium.Otu0067 0.682202
MG3.patient Faecalibacterium.Otu0067 -2.205096
MG4.patient Faecalibacterium.Otu0067 -0.429791
MG6.patient Faecalibacterium.Otu0067 -4.123062
MG8.patient Faecalibacterium.Otu0067 -2.038609
MG1.patient Alistipes.Otu2508 -38.585650
MG10.patient Alistipes.Otu2508 -40.860042
MG13.patient Alistipes.Otu2508 8.763224
MG14.patient Alistipes.Otu2508 -5.727386
MG16.patient Alistipes.Otu2508 0.045884
MG17.patient Alistipes.Otu2508 -38.006546
MG19.patient Alistipes.Otu2508 1.422419
MG2.patient Alistipes.Otu2508 -39.939878
MG21.patient Alistipes.Otu2508 -7.190270
MG22.patient Alistipes.Otu2508 -0.544539
MG23.patient Alistipes.Otu2508 0.000000
MG25.patient Alistipes.Otu2508 0.589309
MG3.patient Alistipes.Otu2508 40.339473
MG4.patient Alistipes.Otu2508 0.000000
MG6.patient Alistipes.Otu2508 1.224207
MG8.patient Alistipes.Otu2508 0.000000
MG1.patient Ruminococcus.Otu1859 -32.885231
MG10.patient Ruminococcus.Otu1859 0.000000
MG13.patient Ruminococcus.Otu1859 -35.886247
MG14.patient Ruminococcus.Otu1859 -6.005116
MG16.patient Ruminococcus.Otu1859 -3.190626
MG17.patient Ruminococcus.Otu1859 0.000000
MG19.patient Ruminococcus.Otu1859 -2.934050
MG2.patient Ruminococcus.Otu1859 -41.278858
MG21.patient Ruminococcus.Otu1859 -39.396080
MG22.patient Ruminococcus.Otu1859 -37.226343
MG23.patient Ruminococcus.Otu1859 0.000000
MG25.patient Ruminococcus.Otu1859 -3.023613
MG3.patient Ruminococcus.Otu1859 -38.590092
MG4.patient Ruminococcus.Otu1859 0.000000
MG6.patient Ruminococcus.Otu1859 -38.114342
MG8.patient Ruminococcus.Otu1859 -3.105813
MG1.patient Bacteroides.Otu2065 -37.344659
MG10.patient Bacteroides.Otu2065 -40.491305
MG13.patient Bacteroides.Otu2065 0.000000
MG14.patient Bacteroides.Otu2065 0.000000
MG16.patient Bacteroides.Otu2065 -6.902830
MG17.patient Bacteroides.Otu2065 0.000000
MG19.patient Bacteroides.Otu2065 43.948405
MG2.patient Bacteroides.Otu2065 0.000000
MG21.patient Bacteroides.Otu2065 -40.064364
MG22.patient Bacteroides.Otu2065 0.000000
MG23.patient Bacteroides.Otu2065 0.000000
MG25.patient Bacteroides.Otu2065 0.000000
MG3.patient Bacteroides.Otu2065 -0.375564
MG4.patient Bacteroides.Otu2065 0.000000
MG6.patient Bacteroides.Otu2065 0.000000
MG8.patient Bacteroides.Otu2065 1.915150
MG1.patient Bacteroides.Otu0848 38.518129
MG10.patient Bacteroides.Otu0848 3.096685
MG13.patient Bacteroides.Otu0848 37.791265
MG14.patient Bacteroides.Otu0848 2.291088
MG16.patient Bacteroides.Otu0848 -1.490196
MG17.patient Bacteroides.Otu0848 -35.743521
MG19.patient Bacteroides.Otu0848 -35.815822
MG2.patient Bacteroides.Otu0848 0.869445
MG21.patient Bacteroides.Otu0848 -1.563159
MG22.patient Bacteroides.Otu0848 0.107586
MG23.patient Bacteroides.Otu0848 42.402085
MG25.patient Bacteroides.Otu0848 4.499873
MG3.patient Bacteroides.Otu0848 2.749419
MG4.patient Bacteroides.Otu0848 -37.414620
MG6.patient Bacteroides.Otu0848 0.929187
MG8.patient Bacteroides.Otu0848 0.411228
MG1.patient Prevotella.Otu1994 0.000000
MG10.patient Prevotella.Otu1994 0.000000
MG13.patient Prevotella.Otu1994 -42.501872
MG14.patient Prevotella.Otu1994 0.000000
MG16.patient Prevotella.Otu1994 0.000000
MG17.patient Prevotella.Otu1994 -40.394803
MG19.patient Prevotella.Otu1994 0.000000
MG2.patient Prevotella.Otu1994 -43.151559
MG21.patient Prevotella.Otu1994 39.091555
MG22.patient Prevotella.Otu1994 0.000000
MG23.patient Prevotella.Otu1994 0.000000
MG25.patient Prevotella.Otu1994 -0.431423
MG3.patient Prevotella.Otu1994 0.000000
MG4.patient Prevotella.Otu1994 0.000000
MG6.patient Prevotella.Otu1994 0.000000
MG8.patient Prevotella.Otu1994 0.000000
MG1.patient Bacteroides.Otu2431 37.487116
MG10.patient Bacteroides.Otu2431 -40.960001
MG13.patient Bacteroides.Otu2431 37.435787
MG14.patient Bacteroides.Otu2431 -0.002965
MG16.patient Bacteroides.Otu2431 -0.004586
MG17.patient Bacteroides.Otu2431 -35.836630
MG19.patient Bacteroides.Otu2431 6.150252
MG2.patient Bacteroides.Otu2431 -35.119830

(1.3.1.4.5.2.2.2.1.1.1) Widget 152. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.4.5.2.2.2.1.1.1-32370288d02Dynamic.Pivot.Table.html

(1.3.1.4.5.2.2.2.1.1.1) Widget 153. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data for all pooled samples. Click to see HTML widget file in full window: ./1.3.1.4.5.2.2.2.1.1.1-32328f54c22Dynamic.Pivot.Table.html

(1.3.1.4.5.2.2.2.1.1.1) Table 139. Summary table. Data for all pooled samples. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.5.2.2.2.1.1.1-32328de71ad.1.3.1.4.5.2.2.2.1.1.csv

feature mean sd median incidence
Lachnospiracea_incertae_sedis.Otu0113 -14.8308 17.4183 -3.475205 0.0625
Lachnospiraceae.Otu2512 -13.8055 20.8767 -6.400535 0.1250
Lachnospiraceae.Otu2222 -21.7474 17.6033 -34.250105 0.0000
Lachnospiracea_incertae_sedis.Otu2549 -18.7788 17.8317 -19.034583 0.0000
Lachnospiracea_incertae_sedis.Otu1990 -24.0609 17.4417 -36.049432 0.1250
Ruminococcus.Otu1027 -29.2934 14.5037 -35.838488 0.0000
Lachnospiraceae.Otu0272 -16.0676 17.6295 -2.686725 0.0625
Lachnospiracea_incertae_sedis.Otu2746 -27.8621 16.3966 -36.171322 0.1250
Gemmiger.Otu0907 -7.9072 13.5186 -2.134025 0.1250
Ruminococcus.Otu2545 -20.1244 17.0071 -32.569716 0.0000
Lachnospiraceae.Otu0220 -17.2191 18.7682 -4.851571 0.1875
Blautia.Otu2495 -10.0491 15.4030 -2.865942 0.1875
Bacteroides.Otu2375 7.6996 14.4433 1.712641 0.7500
Ruminococcus.Otu1859 -17.6023 18.3832 -4.597871 0.0000
Roseburia.Otu2637 -17.9486 18.3333 -18.836484 0.3125
Lachnospiraceae.Otu2612 -20.8179 22.7849 -35.790833 0.2500
Bacteroides.Otu1201 1.1801 23.5764 1.359248 0.7500
Bacteroides.Otu0001 1.1963 14.6391 0.748852 0.6875
Ruminococcus.Otu1915 -20.1832 17.3178 -32.385739 0.0000
Blautia.Otu2475 -3.4588 9.0540 -0.957939 0.1250
Bacteroides.Otu0863 0.7973 20.3297 2.033047 0.6250
Lachnospiracea_incertae_sedis.Otu1152 -18.6852 22.3447 -34.861688 0.3125
Bacteroides.Otu2038 5.5602 11.8453 1.985109 0.7500
Lachnospiraceae.Otu0578 -16.5309 17.9391 -4.357315 0.0000
Blautia.Otu0591 -6.8929 14.0363 -0.519566 0.1875
Bacteroides.Otu0006 3.2629 9.8198 1.142482 0.7500
Lachnospiraceae.Otu0898 13.4235 25.0856 17.995810 0.7500
Bacteroides.Otu0848 1.3524 24.0691 0.899316 0.6875
Coprococcus.Otu0802 -11.6593 21.3409 -2.364726 0.1875
Roseburia.Otu1051 -11.1434 16.5573 -1.471972 0.2500
Bacteroides.Otu0069 5.2569 12.8523 0.415157 0.6875
Bacteroides.Otu2460 3.2374 30.4628 2.733920 0.6875
Bacteroides.Otu2654 -2.0706 22.5328 1.895570 0.5625
Bacteroides.Otu2765 5.7664 13.1931 1.181265 0.5625
Bacteroides.Otu2104 3.4072 21.4173 0.877258 0.6250
Oscillibacter.Otu1518 -16.1920 18.3962 -2.642628 0.0625
Erysipelotrichaceae_incertae_sedis.Otu0818 8.0571 23.2855 2.924897 0.5625
Lachnospiracea_incertae_sedis.Otu0651 -13.4011 16.9161 -2.152154 0.1875
Faecalibacterium.Otu0751 -0.7250 13.0955 -0.185837 0.3750
Ruminococcus.Otu1429 -18.3246 18.7234 -19.087125 0.1250
Dorea.Otu1142 -12.0560 17.9195 -2.001878 0.3125
Faecalibacterium.Otu0067 -0.7322 2.2652 -0.546619 0.3750
Clostridium_IV.Otu1864 -9.3316 24.1560 -0.880359 0.1875
Bacteroides.Otu2437 -9.0723 28.1590 -2.845007 0.3125
Bacteroides.Otu0877 5.1037 17.8443 1.440537 0.5625
Parabacteroides.Otu1378 -5.2075 23.2129 -0.873743 0.4375
Ruminococcaceae.Otu2507 -13.1931 21.9749 -3.494222 0.1875
Clostridium_XI.Otu2681 -12.5226 25.6029 -16.869380 0.2500
Clostridium_XI.Otu1804 -9.6006 17.0011 -1.820782 0.3125
Bacteroides.Otu1669 -6.3664 23.0792 -0.795450 0.3125
Bacteroides.Otu1411 -6.5756 25.7360 -0.243804 0.3125
Bacteroides.Otu0929 -3.6301 23.1632 -0.334407 0.5000
Bacteroides.Otu2431 0.3572 24.0485 -0.003775 0.4375
Parabacteroides.Otu1736 -9.5076 15.9897 -0.648139 0.3750
Clostridiales.Otu1597 -11.8501 17.4708 0.000000 0.0000
Bacteroides.Otu2120 -3.9607 11.7962 0.037498 0.5000
Lachnospiraceae.Otu2599 -8.4019 15.6762 -0.479147 0.3750
Bacteroides.Otu2520 -0.3836 15.2933 -0.774802 0.3750
Bacteroides.Otu0752 -1.7986 23.9991 1.107317 0.6250
Clostridium_XlVa.Otu0236 -0.4875 2.5969 -0.052340 0.5000
Lachnospiracea_incertae_sedis.Otu0778 -11.7018 17.5904 -1.867060 0.2500
Lachnospiraceae.Otu0875 -12.9983 18.9812 -1.527016 0.4375
Lachnospiraceae.Otu1734 -13.0754 17.8716 -1.609476 0.3125
Roseburia.Otu2084 -11.1061 17.7595 -0.162035 0.5000
Lachnospiraceae.Otu0790 -8.6662 16.4397 -1.439198 0.3750
Bacteroides.Otu2625 -6.1170 28.6756 -1.212884 0.4375
Bacteroides.Otu2343 3.0300 20.3777 0.000000 0.4375
Prevotella.Otu1803 -2.8878 20.0381 0.000000 0.1250
Prevotella.Otu1987 -3.1498 17.3634 0.000000 0.0625
Blautia.Otu0620 -4.6284 12.1581 -0.153519 0.3750
Bacteroides.Otu2383 -2.1306 23.9675 0.000000 0.4375
Alistipes.Otu2508 -7.4044 21.7771 0.000000 0.3750
Prevotella.Otu0634 -13.0720 22.8309 -1.895045 0.1875
Escherichia_Shigella.Otu2393 -10.2235 25.5473 -1.750295 0.1875
Bacteroides.Otu0661 0.3144 20.0050 -0.234428 0.3750
Prevotella.Otu2602 -4.8287 18.0022 0.000000 0.0625
Enterococcus.Otu1019 9.2427 20.5438 0.000000 0.3750
Bacteroides.Otu1565 -4.4323 25.2277 -0.187782 0.2500
Bacteroides.Otu0775 1.7448 23.5730 0.000000 0.3750
Alistipes.Otu1466 2.7046 22.0781 0.000000 0.3750
Bacteroides.Otu2481 -10.9561 16.9586 0.000000 0.0000
Ruminococcaceae.Otu0064 -7.7628 19.8311 0.000000 0.0625
Parabacteroides.Otu1107 -10.2856 21.4178 -0.399986 0.2500
Sutterella.Otu1997 -11.0368 22.5584 0.000000 0.1875
Prevotella.Otu1563 -2.8342 17.0290 0.000000 0.0625
Bacteroidales.Otu1168 2.9590 24.2796 0.000000 0.3125
Prevotella.Otu1994 -5.4618 20.5771 0.000000 0.0625
Prevotella.Otu1319 -3.0463 16.1664 0.000000 0.0625
Alistipes.Otu0529 -8.6023 20.9586 0.000000 0.2500
Bacteroides.Otu2534 9.3752 15.5490 0.000000 0.3125
Bacteroides.Otu0480 -2.2450 22.3175 0.000000 0.1250
Bifidobacterium.Otu1244 -10.4247 20.4415 0.000000 0.1250
Bacteroides.Otu0786 2.7849 20.9528 0.000000 0.3125
Bacteroides.Otu1624 -0.7346 18.6586 0.000000 0.2500
Prevotella.Otu1633 1.7773 16.8689 0.000000 0.2500
Akkermansia.Otu1935 -0.1850 17.4569 0.000000 0.2500
Bacteroides.Otu2065 -4.9572 20.3782 0.000000 0.1250
Prevotella.Otu0773 -5.1181 18.5530 0.000000 0.0625
Ruminococcus.Otu0422 -9.2203 16.5984 0.000000 0.0000
Sutterella.Otu0171 -0.5875 20.2877 0.000000 0.1875
Prevotella.Otu2327 1.2092 14.9532 0.000000 0.1250
Megamonas.Otu2657 -3.0676 16.7204 0.000000 0.0625
Bacteroides.Otu2216 -6.3730 20.6095 0.000000 0.1250
Bacteroides.Otu1726 -6.8393 14.8645 0.000000 0.0000
Phascolarctobacterium.Otu1814 4.0832 18.2766 0.000000 0.3125
Prevotella.Otu0882 -3.9763 18.2355 0.000000 0.1250
Prevotellaceae.Otu2503 -4.8083 22.5932 0.000000 0.1250
Ruminococcaceae.Otu1504 -7.1870 15.8804 0.000000 0.0625
Klebsiella.Otu1452 4.4357 17.4233 0.000000 0.2500
Prevotella.Otu0738 -3.6036 18.2476 0.000000 0.1250
Lactobacillus.Otu0959 -2.6543 16.7889 0.000000 0.0625
Prevotella.Otu2501 -3.6547 18.3593 0.000000 0.1875
Ruminococcaceae.Otu2510 -6.8976 14.9036 0.000000 0.0000
Prevotella.Otu2666 -2.0044 16.0346 0.000000 0.0625
Streptococcus.Otu0749 1.6599 16.3707 0.000000 0.1250
Catenibacterium.Otu2320 -2.5324 17.2065 0.000000 0.0625
Prevotella.Otu2702 -2.4433 16.0222 0.000000 0.0625
Prevotella.Otu2220 -1.7046 15.6792 0.000000 0.1250
Bacteroides.Otu2277 -2.3644 15.9540 0.000000 0.0625
Megamonas.Otu1877 -0.1153 0.4611 0.000000 0.0000
Lactobacillales.Otu0504 2.6624 10.6497 0.000000 0.0625
Bacteroides.Otu0801 -2.5027 10.0107 0.000000 0.0000

(1.3.1.4.5.2.2.2.1.1.1) Figure 566. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/32326e2a0bd.svg.

(1.3.1.4.5.2.2.2.1.1.1) Figure 567. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3236c75114e.svg.

(1.3.1.4.5.2.2.2.1.1.1) Figure 568. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3231bfdefa3.svg.

(1.3.1.4.5.2.2.2.1.1.1) Figure 569. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3236bb8889a.svg.

(1.3.1.4.5.2.2.2.1.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.5.2.2.2.1.2.1) Figure 570. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3233be46284.svg.

(1.3.1.4.5.2.2.2.1.2.1) Figure 571. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32312c67164.svg.

(1.3.1.4.5.2.2.2.1.2.1) Figure 572. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data for all pooled samples. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323f3559d.svg.

(1.3.1.4.5.2.3) Grouping variables age.quant
(1.3.1.4.5.2.4) Iterating over Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order
(1.3.1.4.5.2.4.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. profile sorting order: GeneSelector paired test ranking
(1.3.1.4.5.2.4.2) Iterating over dodged vs faceted bars

The same data are shown in multiple combinations of graphical representations. This is the same data, but each plot highlights slightly different aspects of it. It is not likely that you will need every plot - pick only what you need.

(1.3.1.4.5.2.4.2.1) faceted plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.5.2.4.2.1.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.5.2.4.2.1.1.0) Table 140. Data table used for plots. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.5.2.4.2.1.1.0-3237e2e782.1.3.1.4.5.2.4.2.1.1.csv

.record.id age.quant feature l2fc
MG1.patient (15.3,26.4] Bacteroides.Otu0001 0.694991
MG10.patient (8.71,15.3] Bacteroides.Otu0001 5.049920
MG13.patient (15.3,26.4] Bacteroides.Otu0001 42.625385
MG14.patient (15.3,26.4] Bacteroides.Otu0001 -0.242777
MG16.patient (15.3,26.4] Bacteroides.Otu0001 0.173279
MG17.patient (15.3,26.4] Bacteroides.Otu0001 1.894468
MG19.patient (6.27,8.71] Bacteroides.Otu0001 0.802713
MG2.patient (8.71,15.3] Bacteroides.Otu0001 -36.927183
MG21.patient (15.3,26.4] Bacteroides.Otu0001 0.990007
MG22.patient (8.71,15.3] Bacteroides.Otu0001 -1.763697
MG23.patient (6.27,8.71] Bacteroides.Otu0001 0.287426
MG25.patient [3.18,6.27] Bacteroides.Otu0001 2.785405
MG3.patient (6.27,8.71] Bacteroides.Otu0001 3.089662
MG4.patient (6.27,8.71] Bacteroides.Otu0001 1.622551
MG6.patient (8.71,15.3] Bacteroides.Otu0001 -1.517464
MG8.patient [3.18,6.27] Bacteroides.Otu0001 -0.424184
MG1.patient (15.3,26.4] Bacteroides.Otu2520 7.047037
MG10.patient (8.71,15.3] Bacteroides.Otu2520 -3.119746
MG13.patient (15.3,26.4] Bacteroides.Otu2520 38.498057
MG14.patient (15.3,26.4] Bacteroides.Otu2520 -0.803845
MG16.patient (15.3,26.4] Bacteroides.Otu2520 -2.798154
MG17.patient (15.3,26.4] Bacteroides.Otu2520 -4.773882
MG19.patient (6.27,8.71] Bacteroides.Otu2520 -43.293915
MG2.patient (8.71,15.3] Bacteroides.Otu2520 -3.452479
MG21.patient (15.3,26.4] Bacteroides.Otu2520 -2.743763
MG22.patient (8.71,15.3] Bacteroides.Otu2520 1.089384
MG23.patient (6.27,8.71] Bacteroides.Otu2520 0.000000
MG25.patient [3.18,6.27] Bacteroides.Otu2520 5.145809
MG3.patient (6.27,8.71] Bacteroides.Otu2520 3.786875
MG4.patient (6.27,8.71] Bacteroides.Otu2520 -0.745758
MG6.patient (8.71,15.3] Bacteroides.Otu2520 -0.854567
MG8.patient [3.18,6.27] Bacteroides.Otu2520 0.881099
MG1.patient (15.3,26.4] Prevotella.Otu1987 -42.475127
MG10.patient (8.71,15.3] Prevotella.Otu1987 0.000000
MG13.patient (15.3,26.4] Prevotella.Otu1987 -1.613076
MG14.patient (15.3,26.4] Prevotella.Otu1987 0.000000
MG16.patient (15.3,26.4] Prevotella.Otu1987 0.000000
MG17.patient (15.3,26.4] Prevotella.Otu1987 -8.254042
MG19.patient (6.27,8.71] Prevotella.Otu1987 0.000000
MG2.patient (8.71,15.3] Prevotella.Otu1987 -5.672154
MG21.patient (15.3,26.4] Prevotella.Otu1987 42.028746
MG22.patient (8.71,15.3] Prevotella.Otu1987 0.000000
MG23.patient (6.27,8.71] Prevotella.Otu1987 0.000000
MG25.patient [3.18,6.27] Prevotella.Otu1987 -2.791150
MG3.patient (6.27,8.71] Prevotella.Otu1987 0.000000
MG4.patient (6.27,8.71] Prevotella.Otu1987 0.000000
MG6.patient (8.71,15.3] Prevotella.Otu1987 0.000000
MG8.patient [3.18,6.27] Prevotella.Otu1987 -31.619530
MG1.patient (15.3,26.4] Bacteroides.Otu2654 9.154794
MG10.patient (8.71,15.3] Bacteroides.Otu2654 4.010515
MG13.patient (15.3,26.4] Bacteroides.Otu2654 40.490152
MG14.patient (15.3,26.4] Bacteroides.Otu2654 1.821609
MG16.patient (15.3,26.4] Bacteroides.Otu2654 -1.354770
MG17.patient (15.3,26.4] Bacteroides.Otu2654 -31.836630
MG19.patient (6.27,8.71] Bacteroides.Otu2654 -36.078856
MG2.patient (8.71,15.3] Bacteroides.Otu2654 -35.119830
MG21.patient (15.3,26.4] Bacteroides.Otu2654 -0.521864
MG22.patient (8.71,15.3] Bacteroides.Otu2654 -0.706593
MG23.patient (6.27,8.71] Bacteroides.Otu2654 34.959004
MG25.patient [3.18,6.27] Bacteroides.Otu2654 5.261781
MG3.patient (6.27,8.71] Bacteroides.Otu2654 5.640960
MG4.patient (6.27,8.71] Bacteroides.Otu2654 1.969530
MG6.patient (8.71,15.3] Bacteroides.Otu2654 -33.160157
MG8.patient [3.18,6.27] Bacteroides.Otu2654 2.340754
MG1.patient (15.3,26.4] Bacteroides.Otu0863 2.493363
MG10.patient (8.71,15.3] Bacteroides.Otu0863 2.879130
MG13.patient (15.3,26.4] Bacteroides.Otu0863 40.174694
MG14.patient (15.3,26.4] Bacteroides.Otu0863 2.522220
MG16.patient (15.3,26.4] Bacteroides.Otu0863 3.051349
MG17.patient (15.3,26.4] Bacteroides.Otu0863 -38.436527
MG19.patient (6.27,8.71] Bacteroides.Otu0863 -38.623156
MG2.patient (8.71,15.3] Bacteroides.Otu0863 2.823608
MG21.patient (15.3,26.4] Bacteroides.Otu0863 -2.105128
MG22.patient (8.71,15.3] Bacteroides.Otu0863 1.040321
MG23.patient (6.27,8.71] Bacteroides.Otu0863 39.385208
MG25.patient [3.18,6.27] Bacteroides.Otu0863 3.213274
MG3.patient (6.27,8.71] Bacteroides.Otu0863 -2.529878
MG4.patient (6.27,8.71] Bacteroides.Otu0863 -3.181104
MG6.patient (8.71,15.3] Bacteroides.Otu0863 1.572731
MG8.patient [3.18,6.27] Bacteroides.Otu0863 -1.523829
MG1.patient (15.3,26.4] Bacteroides.Otu2038 1.663290
MG10.patient (8.71,15.3] Bacteroides.Otu2038 36.073634
MG13.patient (15.3,26.4] Bacteroides.Otu2038 7.467646
MG14.patient (15.3,26.4] Bacteroides.Otu2038 2.306928
MG16.patient (15.3,26.4] Bacteroides.Otu2038 -2.050774
MG17.patient (15.3,26.4] Bacteroides.Otu2038 4.940348
MG19.patient (6.27,8.71] Bacteroides.Otu2038 1.159382
MG2.patient (8.71,15.3] Bacteroides.Otu2038 33.989275
MG21.patient (15.3,26.4] Bacteroides.Otu2038 2.660962
MG22.patient (8.71,15.3] Bacteroides.Otu2038 -3.672197
MG23.patient (6.27,8.71] Bacteroides.Otu2038 1.055541
MG25.patient [3.18,6.27] Bacteroides.Otu2038 2.869377
MG3.patient (6.27,8.71] Bacteroides.Otu2038 2.857576
MG4.patient (6.27,8.71] Bacteroides.Otu2038 1.647018
MG6.patient (8.71,15.3] Bacteroides.Otu2038 -2.255223
MG8.patient [3.18,6.27] Bacteroides.Otu2038 -1.749982
MG1.patient (15.3,26.4] Faecalibacterium.Otu0067 -6.063997
MG10.patient (8.71,15.3] Faecalibacterium.Otu0067 0.381534
MG13.patient (15.3,26.4] Faecalibacterium.Otu0067 -0.663448
MG14.patient (15.3,26.4] Faecalibacterium.Otu0067 -1.733991
MG16.patient (15.3,26.4] Faecalibacterium.Otu0067 -1.509331
MG17.patient (15.3,26.4] Faecalibacterium.Otu0067 1.246309
MG19.patient (6.27,8.71] Faecalibacterium.Otu0067 3.007372
MG2.patient (8.71,15.3] Faecalibacterium.Otu0067 -0.819669
MG21.patient (15.3,26.4] Faecalibacterium.Otu0067 1.900814
MG22.patient (8.71,15.3] Faecalibacterium.Otu0067 -0.426908
MG23.patient (6.27,8.71] Faecalibacterium.Otu0067 1.080606
MG25.patient [3.18,6.27] Faecalibacterium.Otu0067 0.682202
MG3.patient (6.27,8.71] Faecalibacterium.Otu0067 -2.205096
MG4.patient (6.27,8.71] Faecalibacterium.Otu0067 -0.429791
MG6.patient (8.71,15.3] Faecalibacterium.Otu0067 -4.123062
MG8.patient [3.18,6.27] Faecalibacterium.Otu0067 -2.038609
MG1.patient (15.3,26.4] Alistipes.Otu2508 -38.585650
MG10.patient (8.71,15.3] Alistipes.Otu2508 -40.860042
MG13.patient (15.3,26.4] Alistipes.Otu2508 8.763224
MG14.patient (15.3,26.4] Alistipes.Otu2508 -5.727386
MG16.patient (15.3,26.4] Alistipes.Otu2508 0.045884
MG17.patient (15.3,26.4] Alistipes.Otu2508 -38.006546
MG19.patient (6.27,8.71] Alistipes.Otu2508 1.422419
MG2.patient (8.71,15.3] Alistipes.Otu2508 -39.939878
MG21.patient (15.3,26.4] Alistipes.Otu2508 -7.190270
MG22.patient (8.71,15.3] Alistipes.Otu2508 -0.544539
MG23.patient (6.27,8.71] Alistipes.Otu2508 0.000000
MG25.patient [3.18,6.27] Alistipes.Otu2508 0.589309
MG3.patient (6.27,8.71] Alistipes.Otu2508 40.339473
MG4.patient (6.27,8.71] Alistipes.Otu2508 0.000000
MG6.patient (8.71,15.3] Alistipes.Otu2508 1.224207
MG8.patient [3.18,6.27] Alistipes.Otu2508 0.000000
MG1.patient (15.3,26.4] Ruminococcus.Otu1859 -32.885231
MG10.patient (8.71,15.3] Ruminococcus.Otu1859 0.000000
MG13.patient (15.3,26.4] Ruminococcus.Otu1859 -35.886247
MG14.patient (15.3,26.4] Ruminococcus.Otu1859 -6.005116
MG16.patient (15.3,26.4] Ruminococcus.Otu1859 -3.190626
MG17.patient (15.3,26.4] Ruminococcus.Otu1859 0.000000
MG19.patient (6.27,8.71] Ruminococcus.Otu1859 -2.934050
MG2.patient (8.71,15.3] Ruminococcus.Otu1859 -41.278858
MG21.patient (15.3,26.4] Ruminococcus.Otu1859 -39.396080
MG22.patient (8.71,15.3] Ruminococcus.Otu1859 -37.226343
MG23.patient (6.27,8.71] Ruminococcus.Otu1859 0.000000
MG25.patient [3.18,6.27] Ruminococcus.Otu1859 -3.023613
MG3.patient (6.27,8.71] Ruminococcus.Otu1859 -38.590092
MG4.patient (6.27,8.71] Ruminococcus.Otu1859 0.000000
MG6.patient (8.71,15.3] Ruminococcus.Otu1859 -38.114342
MG8.patient [3.18,6.27] Ruminococcus.Otu1859 -3.105813
MG1.patient (15.3,26.4] Bacteroides.Otu2065 -37.344659
MG10.patient (8.71,15.3] Bacteroides.Otu2065 -40.491305
MG13.patient (15.3,26.4] Bacteroides.Otu2065 0.000000
MG14.patient (15.3,26.4] Bacteroides.Otu2065 0.000000
MG16.patient (15.3,26.4] Bacteroides.Otu2065 -6.902830
MG17.patient (15.3,26.4] Bacteroides.Otu2065 0.000000
MG19.patient (6.27,8.71] Bacteroides.Otu2065 43.948405
MG2.patient (8.71,15.3] Bacteroides.Otu2065 0.000000
MG21.patient (15.3,26.4] Bacteroides.Otu2065 -40.064364
MG22.patient (8.71,15.3] Bacteroides.Otu2065 0.000000
MG23.patient (6.27,8.71] Bacteroides.Otu2065 0.000000
MG25.patient [3.18,6.27] Bacteroides.Otu2065 0.000000
MG3.patient (6.27,8.71] Bacteroides.Otu2065 -0.375564
MG4.patient (6.27,8.71] Bacteroides.Otu2065 0.000000
MG6.patient (8.71,15.3] Bacteroides.Otu2065 0.000000
MG8.patient [3.18,6.27] Bacteroides.Otu2065 1.915150
MG1.patient (15.3,26.4] Bacteroides.Otu0848 38.518129
MG10.patient (8.71,15.3] Bacteroides.Otu0848 3.096685
MG13.patient (15.3,26.4] Bacteroides.Otu0848 37.791265
MG14.patient (15.3,26.4] Bacteroides.Otu0848 2.291088
MG16.patient (15.3,26.4] Bacteroides.Otu0848 -1.490196
MG17.patient (15.3,26.4] Bacteroides.Otu0848 -35.743521
MG19.patient (6.27,8.71] Bacteroides.Otu0848 -35.815822
MG2.patient (8.71,15.3] Bacteroides.Otu0848 0.869445
MG21.patient (15.3,26.4] Bacteroides.Otu0848 -1.563159
MG22.patient (8.71,15.3] Bacteroides.Otu0848 0.107586
MG23.patient (6.27,8.71] Bacteroides.Otu0848 42.402085
MG25.patient [3.18,6.27] Bacteroides.Otu0848 4.499873
MG3.patient (6.27,8.71] Bacteroides.Otu0848 2.749419
MG4.patient (6.27,8.71] Bacteroides.Otu0848 -37.414620
MG6.patient (8.71,15.3] Bacteroides.Otu0848 0.929187
MG8.patient [3.18,6.27] Bacteroides.Otu0848 0.411228
MG1.patient (15.3,26.4] Prevotella.Otu1994 0.000000
MG10.patient (8.71,15.3] Prevotella.Otu1994 0.000000
MG13.patient (15.3,26.4] Prevotella.Otu1994 -42.501872
MG14.patient (15.3,26.4] Prevotella.Otu1994 0.000000
MG16.patient (15.3,26.4] Prevotella.Otu1994 0.000000
MG17.patient (15.3,26.4] Prevotella.Otu1994 -40.394803
MG19.patient (6.27,8.71] Prevotella.Otu1994 0.000000
MG2.patient (8.71,15.3] Prevotella.Otu1994 -43.151559
MG21.patient (15.3,26.4] Prevotella.Otu1994 39.091555
MG22.patient (8.71,15.3] Prevotella.Otu1994 0.000000
MG23.patient (6.27,8.71] Prevotella.Otu1994 0.000000
MG25.patient [3.18,6.27] Prevotella.Otu1994 -0.431423
MG3.patient (6.27,8.71] Prevotella.Otu1994 0.000000
MG4.patient (6.27,8.71] Prevotella.Otu1994 0.000000
MG6.patient (8.71,15.3] Prevotella.Otu1994 0.000000
MG8.patient [3.18,6.27] Prevotella.Otu1994 0.000000
MG1.patient (15.3,26.4] Bacteroides.Otu2431 37.487116
MG10.patient (8.71,15.3] Bacteroides.Otu2431 -40.960001
MG13.patient (15.3,26.4] Bacteroides.Otu2431 37.435787
MG14.patient (15.3,26.4] Bacteroides.Otu2431 -0.002965
MG16.patient (15.3,26.4] Bacteroides.Otu2431 -0.004586
MG17.patient (15.3,26.4] Bacteroides.Otu2431 -35.836630
MG19.patient (6.27,8.71] Bacteroides.Otu2431 6.150252
MG2.patient (8.71,15.3] Bacteroides.Otu2431 -35.119830

(1.3.1.4.5.2.4.2.1.1.1) Widget 154. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Stacked Bar Chart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.4.5.2.4.2.1.1.1-3235ea15426Dynamic.Pivot.Table.html

(1.3.1.4.5.2.4.2.1.1.1) Widget 155. Dynamic Pivot Table link (drag and drop field names and pick averaging functions or plot types; click on fields or legend elements to filter values). Starting rendering is Table Barchart. Data grouped by age.quant. Click to see HTML widget file in full window: ./1.3.1.4.5.2.4.2.1.1.1-3236bc2abe5Dynamic.Pivot.Table.html

(1.3.1.4.5.2.4.2.1.1.1) Table 141. Summary table. Data grouped by age.quant. Showing only 200 first rows. Full dataset is also saved in a delimited text file (click to download and open e.g. in Excel) data/1.3.1.4.5.2.4.2.1.1.1-323420e043c.1.3.1.4.5.2.4.2.1.1.csv

feature age.quant mean sd median incidence
Lachnospiracea_incertae_sedis.Otu0113 [3.18,6.27] -37.1091 0.396162 -37.10911 0.0000
Lachnospiracea_incertae_sedis.Otu0113 (6.27,8.71] -9.4645 17.534177 -1.83054 0.2500
Lachnospiracea_incertae_sedis.Otu0113 (8.71,15.3] -19.0092 19.497441 -17.71214 0.0000
Lachnospiracea_incertae_sedis.Otu0113 (15.3,26.4] -8.1966 14.465549 -2.85925 0.0000
Lachnospiraceae.Otu2512 [3.18,6.27] -22.3304 23.917116 -22.33040 0.0000
Lachnospiraceae.Otu2512 (6.27,8.71] -1.2585 28.434028 -2.87196 0.5000
Lachnospiraceae.Otu2512 (8.71,15.3] -27.8519 17.909430 -35.16011 0.0000
Lachnospiraceae.Otu2512 (15.3,26.4] -9.9641 13.601658 -6.19610 0.0000
Lachnospiraceae.Otu2222 [3.18,6.27] -37.5152 0.916057 -37.51521 0.0000
Lachnospiraceae.Otu2222 (6.27,8.71] -11.3491 19.636620 -2.34121 0.0000
Lachnospiraceae.Otu2222 (8.71,15.3] -27.7384 17.818013 -35.95260 0.0000
Lachnospiraceae.Otu2222 (15.3,26.4] -19.4298 16.926465 -19.81085 0.0000
Lachnospiracea_incertae_sedis.Otu2549 [3.18,6.27] -35.1417 1.697394 -35.14170 0.0000
Lachnospiracea_incertae_sedis.Otu2549 (6.27,8.71] -11.4474 19.351897 -2.71687 0.0000
Lachnospiracea_incertae_sedis.Otu2549 (8.71,15.3] -27.1741 17.607773 -35.49915 0.0000
Lachnospiracea_incertae_sedis.Otu2549 (15.3,26.4] -12.6152 17.045268 -3.17454 0.0000
Lachnospiracea_incertae_sedis.Otu1990 [3.18,6.27] -37.4897 0.664231 -37.48969 0.0000
Lachnospiracea_incertae_sedis.Otu1990 (6.27,8.71] -20.6638 18.440122 -20.24941 0.0000
Lachnospiracea_incertae_sedis.Otu1990 (8.71,15.3] -27.4699 18.439935 -35.80851 0.2500
Lachnospiracea_incertae_sedis.Otu1990 (15.3,26.4] -19.5767 19.741359 -21.49643 0.1667
Ruminococcus.Otu1027 [3.18,6.27] -36.2570 0.512689 -36.25700 0.0000
Ruminococcus.Otu1027 (6.27,8.71] -27.1517 18.120754 -35.61531 0.0000
Ruminococcus.Otu1027 (8.71,15.3] -27.7609 18.216941 -36.13609 0.0000
Ruminococcus.Otu1027 (15.3,26.4] -29.4218 14.488759 -34.79214 0.0000
Lachnospiraceae.Otu0272 [3.18,6.27] -35.8775 0.625735 -35.87751 0.0000
Lachnospiraceae.Otu0272 (6.27,8.71] -10.8729 19.451388 -1.73895 0.0000
Lachnospiraceae.Otu0272 (8.71,15.3] -17.6731 19.676199 -17.69187 0.0000
Lachnospiraceae.Otu0272 (15.3,26.4] -11.8571 16.465681 -2.68673 0.1667
Lachnospiracea_incertae_sedis.Otu2746 [3.18,6.27] -36.6548 0.734423 -36.65480 0.0000
Lachnospiracea_incertae_sedis.Otu2746 (6.27,8.71] -29.3434 17.026456 -37.09034 0.0000
Lachnospiracea_incertae_sedis.Otu2746 (8.71,15.3] -27.1508 18.818503 -36.37128 0.2500
Lachnospiracea_incertae_sedis.Otu2746 (15.3,26.4] -24.4179 19.305237 -36.12769 0.1667
Gemmiger.Otu0907 [3.18,6.27] -2.1340 0.007143 -2.13403 0.0000
Gemmiger.Otu0907 (6.27,8.71] -8.4696 15.414659 -1.17321 0.0000
Gemmiger.Otu0907 (8.71,15.3] -19.2963 19.860245 -19.59875 0.0000
Gemmiger.Otu0907 (15.3,26.4] -1.8640 2.803204 -0.55453 0.3333
Ruminococcus.Otu2545 [3.18,6.27] -18.5542 21.871999 -18.55417 0.0000
Ruminococcus.Otu2545 (6.27,8.71] -9.7857 17.838938 -1.33252 0.0000
Ruminococcus.Otu2545 (8.71,15.3] -26.1498 17.471531 -34.34747 0.0000
Ruminococcus.Otu2545 (15.3,26.4] -23.5234 16.387496 -32.88574 0.0000
Lachnospiraceae.Otu0220 [3.18,6.27] -37.7121 0.163025 -37.71208 0.0000
Lachnospiraceae.Otu0220 (6.27,8.71] -12.1772 19.329588 -4.69074 0.2500
Lachnospiraceae.Otu0220 (8.71,15.3] -17.7905 21.374317 -18.19187 0.2500
Lachnospiraceae.Otu0220 (15.3,26.4] -13.3683 18.763065 -2.78310 0.1667
Blautia.Otu2495 [3.18,6.27] -35.5044 1.512274 -35.50439 0.0000
Blautia.Otu2495 (6.27,8.71] -2.0243 1.649102 -2.19516 0.0000
Blautia.Otu2495 (8.71,15.3] -18.7667 19.926634 -18.87555 0.0000
Blautia.Otu2495 (15.3,26.4] -1.1022 1.966212 -0.54842 0.5000
Bacteroides.Otu2375 [3.18,6.27] -1.1153 0.697612 -1.11529 0.0000
Bacteroides.Otu2375 (6.27,8.71] 10.1493 18.551178 1.10995 1.0000
Bacteroides.Otu2375 (8.71,15.3] 0.7513 1.483525 0.81390 0.5000
Bacteroides.Otu2375 (15.3,26.4] 13.6370 17.352700 3.18197 1.0000
Ruminococcus.Otu1859 [3.18,6.27] -3.0647 0.058124 -3.06471 0.0000
Ruminococcus.Otu1859 (6.27,8.71] -10.3810 18.856831 -1.46702 0.0000
Ruminococcus.Otu1859 (8.71,15.3] -29.1549 19.514254 -37.67034 0.0000
Ruminococcus.Otu1859 (15.3,26.4] -19.5606 18.285858 -19.44517 0.0000
Roseburia.Otu2637 [3.18,6.27] -36.8198 1.958286 -36.81976 0.0000
Roseburia.Otu2637 (6.27,8.71] -18.1501 20.079319 -18.40450 0.0000
Roseburia.Otu2637 (8.71,15.3] -17.7572 21.055709 -17.59324 0.5000
Roseburia.Otu2637 (15.3,26.4] -11.6515 17.594222 -1.83668 0.5000
Lachnospiraceae.Otu2612 [3.18,6.27] -37.4374 1.417500 -37.43737 0.0000
Lachnospiraceae.Otu2612 (6.27,8.71] -9.7080 33.825835 -18.15629 0.2500
Lachnospiraceae.Otu2612 (8.71,15.3] -27.5133 19.749906 -36.95624 0.2500
Lachnospiraceae.Otu2612 (15.3,26.4] -18.2211 19.578806 -19.90474 0.3333
Bacteroides.Otu1201 [3.18,6.27] 3.9288 0.428410 3.92884 1.0000
Bacteroides.Otu1201 (6.27,8.71] 0.4155 28.598189 0.89102 0.7500
Bacteroides.Otu1201 (8.71,15.3] -9.0751 18.874637 -0.35174 0.5000
Bacteroides.Otu1201 (15.3,26.4] 7.6104 28.736776 2.91600 0.8333
Bacteroides.Otu0001 [3.18,6.27] 1.1806 2.269522 1.18061 0.5000
Bacteroides.Otu0001 (6.27,8.71] 1.4506 1.223223 1.21263 1.0000
Bacteroides.Otu0001 (8.71,15.3] -8.7896 19.021945 -1.64058 0.2500
Bacteroides.Otu0001 (15.3,26.4] 7.6892 17.130787 0.84250 0.8333
Ruminococcus.Otu1915 [3.18,6.27] -35.8198 1.131031 -35.81977 0.0000
Ruminococcus.Otu1915 (6.27,8.71] -9.7333 17.473658 -1.54003 0.0000
Ruminococcus.Otu1915 (8.71,15.3] -26.2961 17.551030 -34.47899 0.0000
Ruminococcus.Otu1915 (15.3,26.4] -17.8625 17.604707 -18.52726 0.0000
Blautia.Otu2475 [3.18,6.27] -2.1825 2.426251 -2.18246 0.0000
Blautia.Otu2475 (6.27,8.71] -1.7502 0.957542 -1.51342 0.0000
Blautia.Otu2475 (8.71,15.3] -9.4707 18.333895 -0.75745 0.2500
Blautia.Otu2475 (15.3,26.4] -1.0153 1.857386 -0.46682 0.1667
Bacteroides.Otu0863 [3.18,6.27] 0.8447 3.349638 0.84472 0.5000
Bacteroides.Otu0863 (6.27,8.71] -1.2372 31.902662 -2.85549 0.2500
Bacteroides.Otu0863 (8.71,15.3] 2.0789 0.918298 2.19817 1.0000
Bacteroides.Otu0863 (15.3,26.4] 1.2833 24.931152 2.50779 0.6667
Lachnospiracea_incertae_sedis.Otu1152 [3.18,6.27] -36.5919 0.494307 -36.59193 0.0000
Lachnospiracea_incertae_sedis.Otu1152 (6.27,8.71] -11.0215 19.480617 -3.16582 0.2500
Lachnospiracea_incertae_sedis.Otu1152 (8.71,15.3] -17.5285 20.365348 -17.40835 0.5000
Lachnospiracea_incertae_sedis.Otu1152 (15.3,26.4] -18.5966 29.067822 -35.59065 0.3333
Bacteroides.Otu2038 [3.18,6.27] 0.5597 3.266380 0.55970 0.5000
Bacteroides.Otu2038 (6.27,8.71] 1.6799 0.826391 1.40320 1.0000
Bacteroides.Otu2038 (8.71,15.3] 16.0339 21.960637 15.86703 0.5000
Bacteroides.Otu2038 (15.3,26.4] 2.8314 3.207699 2.48395 0.8333
Lachnospiraceae.Otu0578 [3.18,6.27] -34.4807 0.762650 -34.48073 0.0000
Lachnospiraceae.Otu0578 (6.27,8.71] -10.5743 17.031630 -3.25289 0.0000
Lachnospiraceae.Otu0578 (8.71,15.3] -18.1969 21.015477 -17.96359 0.0000
Lachnospiraceae.Otu0578 (15.3,26.4] -13.4081 18.843906 -2.58051 0.0000
Blautia.Otu0591 [3.18,6.27] -0.7426 0.397440 -0.74258 0.0000
Blautia.Otu0591 (6.27,8.71] -9.4631 17.555563 -0.86538 0.0000
Blautia.Otu0591 (8.71,15.3] -8.3243 16.557374 -0.07433 0.2500
Blautia.Otu0591 (15.3,26.4] -6.2752 14.802188 -0.87984 0.3333
Bacteroides.Otu0006 [3.18,6.27] -0.1124 2.427956 -0.11244 0.5000
Bacteroides.Otu0006 (6.27,8.71] 0.9948 1.595193 0.86942 0.7500
Bacteroides.Otu0006 (8.71,15.3] 0.7057 2.736485 0.53335 0.5000
Bacteroides.Otu0006 (15.3,26.4] 7.6047 15.670321 1.46811 1.0000
Lachnospiraceae.Otu0898 [3.18,6.27] -0.7092 1.003018 -0.70924 0.0000
Lachnospiraceae.Otu0898 (6.27,8.71] 9.2680 34.145422 18.96434 0.7500
Lachnospiraceae.Otu0898 (8.71,15.3] 1.3386 29.797843 0.45903 0.7500
Lachnospiraceae.Otu0898 (15.3,26.4] 28.9613 12.454491 33.92185 1.0000
Bacteroides.Otu0848 [3.18,6.27] 2.4556 2.891109 2.45555 1.0000
Bacteroides.Otu0848 (6.27,8.71] -7.0197 37.819820 -16.53320 0.5000
Bacteroides.Otu0848 (8.71,15.3] 1.2507 1.286221 0.89932 1.0000
Bacteroides.Otu0848 (15.3,26.4] 6.6339 28.054532 0.40045 0.5000
Coprococcus.Otu0802 [3.18,6.27] -19.1946 27.145283 -19.19461 0.0000
Coprococcus.Otu0802 (6.27,8.71] -16.3997 21.092350 -16.14225 0.5000
Coprococcus.Otu0802 (8.71,15.3] -1.2030 28.470969 -2.36473 0.2500
Coprococcus.Otu0802 (15.3,26.4] -12.9581 18.315518 -2.58371 0.0000
Roseburia.Otu1051 [3.18,6.27] -17.7003 24.121836 -17.70026 0.0000
Roseburia.Otu1051 (6.27,8.71] -9.8818 16.456244 -2.54769 0.2500
Roseburia.Otu1051 (8.71,15.3] -17.2656 20.775764 -18.12695 0.2500
Roseburia.Otu1051 (15.3,26.4] -5.7174 14.170613 -0.41851 0.3333
Bacteroides.Otu0069 [3.18,6.27] 1.2340 1.404051 1.23404 1.0000
Bacteroides.Otu0069 (6.27,8.71] 10.3196 17.169414 2.65608 1.0000
Bacteroides.Otu0069 (8.71,15.3] 0.3674 3.196193 -0.49496 0.2500
Bacteroides.Otu0069 (15.3,26.4] 6.4824 16.255436 0.41516 0.6667
Bacteroides.Otu2460 [3.18,6.27] 21.0162 24.364194 21.01622 1.0000
Bacteroides.Otu2460 (6.27,8.71] 18.9820 18.793514 18.45353 1.0000
Bacteroides.Otu2460 (8.71,15.3] -18.1557 35.328883 -34.80096 0.2500
Bacteroides.Otu2460 (15.3,26.4] 1.0768 31.748253 0.37908 0.6667
Bacteroides.Otu2654 [3.18,6.27] 3.8013 2.065478 3.80127 1.0000
Bacteroides.Otu2654 (6.27,8.71] 1.6227 29.148946 3.80524 0.7500
Bacteroides.Otu2654 (8.71,15.3] -16.2440 20.769446 -16.93337 0.2500
Bacteroides.Otu2654 (15.3,26.4] 2.9589 23.193662 0.64987 0.5000
Bacteroides.Otu2765 [3.18,6.27] 1.4479 3.562874 1.44791 0.5000
Bacteroides.Otu2765 (6.27,8.71] 10.8019 20.340589 1.81398 0.5000
Bacteroides.Otu2765 (8.71,15.3] 2.2212 1.217581 2.16423 1.0000
Bacteroides.Otu2765 (15.3,26.4] 6.2124 15.246778 -0.33225 0.3333
Bacteroides.Otu2104 [3.18,6.27] -17.0154 30.969425 -17.01543 0.5000
Bacteroides.Otu2104 (6.27,8.71] 10.5244 19.739754 1.51101 0.5000
Bacteroides.Otu2104 (8.71,15.3] 2.2041 1.544481 2.22587 1.0000
Bacteroides.Otu2104 (15.3,26.4] 6.2720 27.031344 0.25693 0.5000
Oscillibacter.Otu1518 [3.18,6.27] -17.0100 24.055779 -17.01000 0.0000
Oscillibacter.Otu1518 (6.27,8.71] -0.2634 0.526818 0.00000 0.0000
Oscillibacter.Otu1518 (8.71,15.3] -27.3203 18.304908 -35.34747 0.0000
Oscillibacter.Otu1518 (15.3,26.4] -19.1194 19.639648 -19.30427 0.1667
Erysipelotrichaceae_incertae_sedis.Otu0818 [3.18,6.27] -0.2533 0.358174 -0.25327 0.0000
Erysipelotrichaceae_incertae_sedis.Otu0818 (6.27,8.71] 0.5109 28.489124 1.32237 0.5000
Erysipelotrichaceae_incertae_sedis.Otu0818 (8.71,15.3] -5.6009 19.805408 1.54963 0.5000
Erysipelotrichaceae_incertae_sedis.Otu0818 (15.3,26.4] 24.9635 18.408620 35.16304 0.8333
Lachnospiracea_incertae_sedis.Otu0651 [3.18,6.27] -18.7617 22.620760 -18.76168 0.0000
Lachnospiracea_incertae_sedis.Otu0651 (6.27,8.71] -16.7900 19.702101 -16.21536 0.2500
Lachnospiracea_incertae_sedis.Otu0651 (8.71,15.3] -8.4033 17.235871 0.00000 0.2500
Lachnospiracea_incertae_sedis.Otu0651 (15.3,26.4] -12.6868 17.426897 -3.50181 0.1667
Faecalibacterium.Otu0751 [3.18,6.27] -1.2773 1.717117 -1.27733 0.0000
Faecalibacterium.Otu0751 (6.27,8.71] 8.5141 17.038238 1.15385 0.5000
Faecalibacterium.Otu0751 (8.71,15.3] -8.9936 18.654648 0.08625 0.5000
Faecalibacterium.Otu0751 (15.3,26.4] -1.1878 2.746427 -0.64489 0.3333
Ruminococcus.Otu1429 [3.18,6.27] -35.5815 2.208351 -35.58155 0.0000
Ruminococcus.Otu1429 (6.27,8.71] -9.3086 17.023627 -2.07712 0.2500
Ruminococcus.Otu1429 (8.71,15.3] -18.4469 21.300714 -18.43030 0.0000
Ruminococcus.Otu1429 (15.3,26.4] -18.5013 20.503870 -17.88528 0.1667
Dorea.Otu1142 [3.18,6.27] -37.3254 1.846063 -37.32537 0.0000
Dorea.Otu1142 (6.27,8.71] -11.3060 18.538781 -2.59509 0.0000
Dorea.Otu1142 (8.71,15.3] -8.7154 19.646055 -0.17647 0.5000
Dorea.Otu1142 (15.3,26.4] -6.3600 14.870167 -0.83198 0.5000
Faecalibacterium.Otu0067 [3.18,6.27] -0.6782 1.923904 -0.67820 0.5000
Faecalibacterium.Otu0067 (6.27,8.71] 0.3633 2.215949 0.32541 0.5000
Faecalibacterium.Otu0067 (8.71,15.3] -1.2470 1.981499 -0.62329 0.2500
Faecalibacterium.Otu0067 (15.3,26.4] -1.1373 2.824998 -1.08639 0.3333
Clostridium_IV.Otu1864 [3.18,6.27] -17.3785 24.576893 -17.37849 0.0000
Clostridium_IV.Otu1864 (6.27,8.71] 8.3920 32.572306 15.73101 0.5000
Clostridium_IV.Otu1864 (8.71,15.3] -19.8712 22.419180 -19.70533 0.0000
Clostridium_IV.Otu1864 (15.3,26.4] -11.4387 17.893787 -0.41371 0.1667
Bacteroides.Otu2437 [3.18,6.27] -17.0728 21.986365 -17.07282 0.0000
Bacteroides.Otu2437 (6.27,8.71] -1.4395 33.169370 -1.55916 0.2500
Bacteroides.Otu2437 (8.71,15.3] -19.6361 21.479144 -20.16769 0.2500
Bacteroides.Otu2437 (15.3,26.4] -4.4513 34.030253 -15.02472 0.5000
Bacteroides.Otu0877 [3.18,6.27] 17.2079 25.983941 17.20794 0.5000
Bacteroides.Otu0877 (6.27,8.71] 2.0207 29.412355 3.96983 0.7500
Bacteroides.Otu0877 (8.71,15.3] 0.5034 3.494225 -0.15821 0.5000
Bacteroides.Otu0877 (15.3,26.4] 6.1910 14.466960 0.47113 0.5000
Parabacteroides.Otu1378 [3.18,6.27] -12.7443 29.522005 -12.74432 0.5000
Parabacteroides.Otu1378 (6.27,8.71] -8.2737 16.956408 -0.87374 0.2500
Parabacteroides.Otu1378 (8.71,15.3] 1.4984 27.904842 2.12876 0.7500
Parabacteroides.Otu1378 (15.3,26.4] -5.1216 27.134050 -2.53489 0.3333
Ruminococcaceae.Otu2507 [3.18,6.27] -16.2175 22.935041 -16.21752 0.0000
Ruminococcaceae.Otu2507 (6.27,8.71] -7.1019 18.401622 0.44607 0.5000
Ruminococcaceae.Otu2507 (8.71,15.3] -8.4144 33.707555 -16.62659 0.2500
Ruminococcaceae.Otu2507 (15.3,26.4] -19.4316 18.981058 -18.09324 0.0000
Clostridium_XI.Otu2681 [3.18,6.27] -34.8046 3.351028 -34.80458 0.0000
Clostridium_XI.Otu2681 (6.27,8.71] -25.6778 15.699197 -32.88104 0.0000
Clostridium_XI.Otu2681 (8.71,15.3] -8.5329 16.471363 -1.23529 0.2500
Clostridium_XI.Otu2681 (15.3,26.4] 1.0152 32.922972 1.35206 0.5000
Clostridium_XI.Otu1804 [3.18,6.27] -1.1025 5.831213 -1.10252 0.5000
Clostridium_XI.Otu1804 (6.27,8.71] -10.5122 17.507384 -1.98541 0.0000
Clostridium_XI.Otu1804 (8.71,15.3] -8.0945 18.393275 0.43227 0.5000
Clostridium_XI.Otu1804 (15.3,26.4] -12.8297 20.725261 -2.85573 0.3333
Bacteroides.Otu1669 [3.18,6.27] 2.3073 3.427955 2.30734 0.5000
Bacteroides.Otu1669 (6.27,8.71] -9.4545 18.899890 -1.50738 0.2500
Bacteroides.Otu1669 (8.71,15.3] -26.0629 17.171999 -33.63999 0.0000
Bacteroides.Otu1669 (15.3,26.4] 5.9319 25.976282 -0.49000 0.5000

(1.3.1.4.5.2.4.2.1.1.1) Figure 573. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar_stacked plot. Image file: plots/32323bc4f73.svg.

(1.3.1.4.5.2.4.2.1.1.1) Figure 574. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3237fbffad7.svg.

(1.3.1.4.5.2.4.2.1.1.1) Figure 575. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3234fa61fd3.svg.

(1.3.1.4.5.2.4.2.1.1.1) Figure 576. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/323592a3912.svg.

(1.3.1.4.5.2.4.2.1.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.5.2.4.2.1.2.1) Figure 577. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/3235e236105.svg.

(1.3.1.4.5.2.4.2.1.2.1) Figure 578. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/323337dbd4f.svg.

(1.3.1.4.5.2.4.2.1.2.1) Figure 579. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32393419c6.svg.

(1.3.1.4.5.2.4.2.2) dodged plots. Iterating over orientation and, optionally, scaling
(1.3.1.4.5.2.4.2.2.1) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in original orientation, Y axis SQRT scaled. Iterating over plot geometry

(1.3.1.4.5.2.4.2.2.1.1) Figure 580. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/323479e0e60.svg.

(1.3.1.4.5.2.4.2.2.1.1) Figure 581. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/32345a0cdf4.svg.

(1.3.1.4.5.2.4.2.2.1.1) Figure 582. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/3231f77436e.svg.

(1.3.1.4.5.2.4.2.2.2) Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Plot is in flipped orientation, Y axis not scaled. Iterating over plot geometry

(1.3.1.4.5.2.4.2.2.2.1) Figure 583. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. bar (sample median) plot. Image file: plots/32315cc403d.svg.

(1.3.1.4.5.2.4.2.2.2.1) Figure 584. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. violin plot. Image file: plots/3233ca2a90.svg.

(1.3.1.4.5.2.4.2.2.2.1) Figure 585. Log2 fold change in abundance between paired samples. Samples are paired according to attribute MatchedGroupID, resulting in 16 pairs. When fold change or difference is computed, this is done as 'patient by control'. Data grouped by age.quant. Sorting order of features is GeneSelector paired test ranking. boxplot plot. Image file: plots/32359dd71d6.svg.

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